Reading info.rhd file...

Reading Intan Technologies RHD2000 Data File, Version 1.5

n signal groups 7
Found 32 amplifier channels.
Found 3 auxiliary input channels.
Found 1 supply voltage channel.
Found 0 board ADC channels.
Found 1 board digital input channel.
Found 0 board digital output channels.
Found 0 temperature sensors channels.

Header file contains no data.  Amplifiers were sampled at 30.00 kS/s.
Done!  Elapsed time: 0.0 seconds

Recording Info
--------------

amplifier_sampling_rate    30000.0
dig_in_sampling_rate       30000.0
notch_filter               60
ports                      
    C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C, C
channels                   
    0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31
num_channels               32
dig_in                     
    0
file_type                  one file per channel

clustering_params.json not found in recording directory. Pulling parameters from defaults
spike_array_params.json not found in recording directory. Pulling parameters from defaults
psth_params.json not found in recording directory. Pulling parameters from defaults
pal_id_params.json not found in recording directory. Pulling parameters from defaults
CAR_params.json not found in recording directory. Pulling parameters from defaults
Writing parameters to JSON...Writing all parameters to json file in analysis_params folder...

Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Extract Intan Data
--------------------
Creating empty HDF5 store with raw data groups
Writing RN24_ctaTest.h5 ...Done!

Creating empty arrays in hdf5 store for raw data...Done!
Extracting Intan data to HDF5 Store:
 h5 file: /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest.h5

Reading time data...
Writing time data...Done!

----------
Extracting Digital Signal Data
----------
Reading digitalin data from board-DIN-00.dat...Done!
Writing data from ditigal in channel 0 to dig_in_0...Done!
Done! Elapsed Time: 0.71


----------
Extracting Amplifier Signal Data
----------
Reading data from amp-C-000.dat...Done!
Writing data from port C channel 0 to electrode0...Done!
Reading data from amp-C-001.dat...Done!
Writing data from port C channel 1 to electrode1...Done!
Reading data from amp-C-002.dat...Done!
Writing data from port C channel 2 to electrode2...Done!
Reading data from amp-C-003.dat...Done!
Writing data from port C channel 3 to electrode3...Done!
Reading data from amp-C-004.dat...Done!
Writing data from port C channel 4 to electrode4...Done!
Reading data from amp-C-005.dat...Done!
Writing data from port C channel 5 to electrode5...Done!
Reading data from amp-C-006.dat...Done!
Writing data from port C channel 6 to electrode6...Done!
Reading data from amp-C-007.dat...Done!
Writing data from port C channel 7 to electrode7...Done!
Reading data from amp-C-008.dat...Done!
Writing data from port C channel 8 to electrode8...Done!
Reading data from amp-C-009.dat...Done!
Writing data from port C channel 9 to electrode9...Done!
Reading data from amp-C-010.dat...Done!
Writing data from port C channel 10 to electrode10...Done!
Reading data from amp-C-011.dat...Done!
Writing data from port C channel 11 to electrode11...Done!
Reading data from amp-C-012.dat...Done!
Writing data from port C channel 12 to electrode12...Done!
Reading data from amp-C-013.dat...Done!
Writing data from port C channel 13 to electrode13...Done!
Reading data from amp-C-014.dat...Done!
Writing data from port C channel 14 to electrode14...Done!
Reading data from amp-C-015.dat...Done!
Writing data from port C channel 15 to electrode15...Done!
Reading data from amp-C-016.dat...Done!
Writing data from port C channel 16 to electrode16...Done!
Reading data from amp-C-017.dat...Done!
Writing data from port C channel 17 to electrode17...Done!
Reading data from amp-C-018.dat...Done!
Writing data from port C channel 18 to electrode18...Done!
Reading data from amp-C-019.dat...Done!
Writing data from port C channel 19 to electrode19...Done!
Reading data from amp-C-020.dat...Done!
Writing data from port C channel 20 to electrode20...Done!
Reading data from amp-C-021.dat...Done!
Writing data from port C channel 21 to electrode21...Done!
Reading data from amp-C-022.dat...Done!
Writing data from port C channel 22 to electrode22...Done!
Reading data from amp-C-023.dat...Done!
Writing data from port C channel 23 to electrode23...Done!
Reading data from amp-C-024.dat...Done!
Writing data from port C channel 24 to electrode24...Done!
Reading data from amp-C-025.dat...Done!
Writing data from port C channel 25 to electrode25...Done!
Reading data from amp-C-026.dat...Done!
Writing data from port C channel 26 to electrode26...Done!
Reading data from amp-C-027.dat...Done!
Writing data from port C channel 27 to electrode27...Done!
Reading data from amp-C-028.dat...Done!
Writing data from port C channel 28 to electrode28...Done!
Reading data from amp-C-029.dat...Done!
Writing data from port C channel 29 to electrode29...Done!
Reading data from amp-C-030.dat...Done!
Writing data from port C channel 30 to electrode30...Done!
Reading data from amp-C-031.dat...Done!
Writing data from port C channel 31 to electrode31...Done!
Done! Elapsed Time: 27.15

Writing electrode_map to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest.h5...
Writing digital_input_map to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest.h5...
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Data Extraction Complete
--------------------

----------
Gathering Trial Data and Creating Table
----------
Generating trial list for digital inputs: 0
Grabbing data for digital input 0...Done!
Constructing DataFrame...Done!
Writing data to h5 file...Done!
Done! Elapsed Time: 0.37

No digital output data found
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p

Marking dead channels
----------
Marking eletrodes [11] as dead.
They will be excluded from common average referencing.
Writing electrode_map to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest.h5...
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Running Spike Detection
-------------------
Parameters
file_dir             /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956
data_quality         clean
sampling_rate        30000.0
clustering_params    
    Max Number of Clusters      7
    Max Number of Iterations    1000
    Convergence Criterion       0.001
    GMM random restarts         10
    
data_params          
    V_cutoff for disconnected headstage     1500
    Max rate of cutoff breach per second    0.2
    Max allowed seconds with a breach       10
    Max allowed breaches per second         20
    Intra-cluster waveform amp SD cutoff    3
    
bandpass_params      
    Lower freq cutoff    300
    Upper freq cutoff    3000
    
spike_snapshot       
    Time before spike (ms)    0.5
    Time after spike (ms)     1
    

Could not find referenced data for electrode 3. Using raw.
Could not find referenced data for electrode 6. Using raw.
Could not find referenced data for electrode 10. Using raw.
Could not find referenced data for electrode 16. Using raw.
Could not find referenced data for electrode 21. Using raw.
Could not find referenced data for electrode 27. Using raw.
Could not find referenced data for electrode 4. Using raw.
Could not find referenced data for electrode 8. Using raw.
Could not find referenced data for electrode 14. Using raw.
Could not find referenced data for electrode 19. Using raw.
Could not find referenced data for electrode 24. Using raw.
Could not find referenced data for electrode 29. Using raw.
Could not find referenced data for electrode 2. Using raw.
Could not find referenced data for electrode 5. Using raw.
Could not find referenced data for electrode 12. Using raw.
Could not find referenced data for electrode 17. Using raw.
Could not find referenced data for electrode 22. Using raw.
Could not find referenced data for electrode 28. Using raw.
Could not find referenced data for electrode 1. Using raw.
Could not find referenced data for electrode 9. Using raw.
Could not find referenced data for electrode 15. Using raw.
Could not find referenced data for electrode 20. Using raw.
Could not find referenced data for electrode 25. Using raw.
Could not find referenced data for electrode 30. Using raw.
Could not find referenced data for electrode 0. Using raw.
Could not find referenced data for electrode 7. Using raw.
Could not find referenced data for electrode 13. Using raw.
Could not find referenced data for electrode 18. Using raw.
Could not find referenced data for electrode 23. Using raw.
Could not find referenced data for electrode 26. Using raw.
Could not find referenced data for electrode 31. Using raw.
Electrode    Result    Cutoff (s)
  0            1         1205
  1            1         1205
  2            1         1205
  3            1         1205
  4            1         1205
  5            1         1205
  6            1         1205
  7            1         1205
  8            1         1205
  9            1         1205
  10           1         1205
  12           1         1205
  13           1         1205
  14           1         1205
  15           1         1205
  16           1         1205
  17           1         1205
  18           1         1205
  19           1         1205
  20           1         1205
  21           1         1205
  22           1         1205
  23           1         1205
  24           1         1205
  25           1         1205
  26           1         1205
  27           1         1205
  28           1         1205
  29           1         1205
  30           1         1205
  31           1         1205
1 - Sucess
0 - No data or no spikes
-1 - Error
Writing electrode_map to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest.h5...
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p

Spike Detection Complete
------------------

----------
Clustering Cleanup
----------
Removing raw data from hdf5 store...Done!

----------
Compressing and repacking h5 file
----------
Repacking /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest.h5 as /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/tmp.h5...
Removing old h5 file: /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest.h5
Renaming temporary file to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest.h5
Done! Elapsed Time: 1.52

Done! Elapsed Time: 6.85

Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p

Removing unit 39. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 39 from dataset
----------

Renaming following units...
Renaming unit040 to unit039
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 38. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 38 from dataset
----------

Renaming following units...
Renaming unit039 to unit038
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 37. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 37 from dataset
----------

Renaming following units...
Renaming unit038 to unit037
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 36. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 36 from dataset
----------

Renaming following units...
Renaming unit037 to unit036
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 35. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 35 from dataset
----------

Renaming following units...
Renaming unit036 to unit035
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 34. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 34 from dataset
----------

Renaming following units...
Renaming unit035 to unit034
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 33. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 33 from dataset
----------

Renaming following units...
Renaming unit034 to unit033
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 32. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 32 from dataset
----------

Renaming following units...
Renaming unit033 to unit032
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 31. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 31 from dataset
----------

Renaming following units...
Renaming unit032 to unit031
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 30. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 30 from dataset
----------

Renaming following units...
Renaming unit031 to unit030
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 28. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 28 from dataset
----------

Renaming following units...
Renaming unit029 to unit028
Renaming unit030 to unit029
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 26. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 26 from dataset
----------

Renaming following units...
Renaming unit027 to unit026
Renaming unit028 to unit027
Renaming unit029 to unit028
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 25. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 25 from dataset
----------

Renaming following units...
Renaming unit026 to unit025
Renaming unit027 to unit026
Renaming unit028 to unit027
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 23. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 23 from dataset
----------

Renaming following units...
Renaming unit024 to unit023
Renaming unit025 to unit024
Renaming unit026 to unit025
Renaming unit027 to unit026
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 22. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 22 from dataset
----------

Renaming following units...
Renaming unit023 to unit022
Renaming unit024 to unit023
Renaming unit025 to unit024
Renaming unit026 to unit025
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 21. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 21 from dataset
----------

Renaming following units...
Renaming unit022 to unit021
Renaming unit023 to unit022
Renaming unit024 to unit023
Renaming unit025 to unit024
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 20. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 20 from dataset
----------

Renaming following units...
Renaming unit021 to unit020
Renaming unit022 to unit021
Renaming unit023 to unit022
Renaming unit024 to unit023
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 19. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 19 from dataset
----------

Renaming following units...
Renaming unit020 to unit019
Renaming unit021 to unit020
Renaming unit022 to unit021
Renaming unit023 to unit022
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 18. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 18 from dataset
----------

Renaming following units...
Renaming unit019 to unit018
Renaming unit020 to unit019
Renaming unit021 to unit020
Renaming unit022 to unit021
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 17. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 17 from dataset
----------

Renaming following units...
Renaming unit018 to unit017
Renaming unit019 to unit018
Renaming unit020 to unit019
Renaming unit021 to unit020
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 14. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 14 from dataset
----------

Renaming following units...
Renaming unit015 to unit014
Renaming unit016 to unit015
Renaming unit017 to unit016
Renaming unit018 to unit017
Renaming unit019 to unit018
Renaming unit020 to unit019
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 10. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 10 from dataset
----------

Renaming following units...
Renaming unit011 to unit010
Renaming unit012 to unit011
Renaming unit013 to unit012
Renaming unit014 to unit013
Renaming unit015 to unit014
Renaming unit016 to unit015
Renaming unit017 to unit016
Renaming unit018 to unit017
Renaming unit019 to unit018
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 9. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 9 from dataset
----------

Renaming following units...
Renaming unit010 to unit009
Renaming unit011 to unit010
Renaming unit012 to unit011
Renaming unit013 to unit012
Renaming unit014 to unit013
Renaming unit015 to unit014
Renaming unit016 to unit015
Renaming unit017 to unit016
Renaming unit018 to unit017
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 8. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 8 from dataset
----------

Renaming following units...
Renaming unit009 to unit008
Renaming unit010 to unit009
Renaming unit011 to unit010
Renaming unit012 to unit011
Renaming unit013 to unit012
Renaming unit014 to unit013
Renaming unit015 to unit014
Renaming unit016 to unit015
Renaming unit017 to unit016
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 6. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 6 from dataset
----------

Renaming following units...
Renaming unit007 to unit006
Renaming unit008 to unit007
Renaming unit009 to unit008
Renaming unit010 to unit009
Renaming unit011 to unit010
Renaming unit012 to unit011
Renaming unit013 to unit012
Renaming unit014 to unit013
Renaming unit015 to unit014
Renaming unit016 to unit015
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 4. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 4 from dataset
----------

Renaming following units...
Renaming unit005 to unit004
Renaming unit006 to unit005
Renaming unit007 to unit006
Renaming unit008 to unit007
Renaming unit009 to unit008
Renaming unit010 to unit009
Renaming unit011 to unit010
Renaming unit012 to unit011
Renaming unit013 to unit012
Renaming unit014 to unit013
Renaming unit015 to unit014
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 2. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 2 from dataset
----------

Renaming following units...
Renaming unit003 to unit002
Renaming unit004 to unit003
Renaming unit005 to unit004
Renaming unit006 to unit005
Renaming unit007 to unit006
Renaming unit008 to unit007
Renaming unit009 to unit008
Renaming unit010 to unit009
Renaming unit011 to unit010
Renaming unit012 to unit011
Renaming unit013 to unit012
Renaming unit014 to unit013
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 1. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 1 from dataset
----------

Renaming following units...
Renaming unit002 to unit001
Renaming unit003 to unit002
Renaming unit004 to unit003
Renaming unit005 to unit004
Renaming unit006 to unit005
Renaming unit007 to unit006
Renaming unit008 to unit007
Renaming unit009 to unit008
Renaming unit010 to unit009
Renaming unit011 to unit010
Renaming unit012 to unit011
Renaming unit013 to unit012
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Removing unit 0. Only 0 spikes.
Deleting Unit...
----------
Deleting unit 0 from dataset
----------

Renaming following units...
Renaming unit001 to unit000
Renaming unit002 to unit001
Renaming unit003 to unit002
Renaming unit004 to unit003
Renaming unit005 to unit004
Renaming unit006 to unit005
Renaming unit007 to unit006
Renaming unit008 to unit007
Renaming unit009 to unit008
Renaming unit010 to unit009
Renaming unit011 to unit010
Renaming unit012 to unit011
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p

Generating unit arrays with parameters:
----------
    dig_ins_to_use    
            0
    laser_channels    
        
    sampling_rate     30000.0
    pre_stimulus      2000
    post_stimulus     5000
    

----------
Making Unit Spike Arrays
----------


----------
Reading Trial Data Table From Store
----------
Done! Elapsed Time: 0.02


----------
Reading Trial Data Table From Store
----------
Done! Elapsed Time: 0.01

Creating spike arrays for dig_in_0...
Done with spike array creation!
----------

Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


---------
Beginning unit similarity calculation
----------
Computing similarity between Unit 0 and Unit 0
Computing similarity between Unit 0 and Unit 1
Computing similarity between Unit 0 and Unit 2
Computing similarity between Unit 0 and Unit 3
Computing similarity between Unit 0 and Unit 4
Computing similarity between Unit 0 and Unit 5
Computing similarity between Unit 0 and Unit 6
Computing similarity between Unit 0 and Unit 7
Computing similarity between Unit 0 and Unit 8
Computing similarity between Unit 0 and Unit 9
Computing similarity between Unit 0 and Unit 10
Computing similarity between Unit 0 and Unit 11
Computing similarity between Unit 1 and Unit 0
Computing similarity between Unit 1 and Unit 1
Computing similarity between Unit 1 and Unit 2
Computing similarity between Unit 1 and Unit 3
Computing similarity between Unit 1 and Unit 4
Computing similarity between Unit 1 and Unit 5
Computing similarity between Unit 1 and Unit 6
Computing similarity between Unit 1 and Unit 7
Computing similarity between Unit 1 and Unit 8
Computing similarity between Unit 1 and Unit 9
Computing similarity between Unit 1 and Unit 10
Computing similarity between Unit 1 and Unit 11
Computing similarity between Unit 2 and Unit 0
Computing similarity between Unit 2 and Unit 1
Computing similarity between Unit 2 and Unit 2
Computing similarity between Unit 2 and Unit 3
Computing similarity between Unit 2 and Unit 4
Computing similarity between Unit 2 and Unit 5
Computing similarity between Unit 2 and Unit 6
Computing similarity between Unit 2 and Unit 7
Computing similarity between Unit 2 and Unit 8
Computing similarity between Unit 2 and Unit 9
Computing similarity between Unit 2 and Unit 10
Computing similarity between Unit 2 and Unit 11
Computing similarity between Unit 3 and Unit 0
Computing similarity between Unit 3 and Unit 1
Computing similarity between Unit 3 and Unit 2
Computing similarity between Unit 3 and Unit 3
Computing similarity between Unit 3 and Unit 4
Computing similarity between Unit 3 and Unit 5
Computing similarity between Unit 3 and Unit 6
Computing similarity between Unit 3 and Unit 7
Computing similarity between Unit 3 and Unit 8
Computing similarity between Unit 3 and Unit 9
Computing similarity between Unit 3 and Unit 10
Computing similarity between Unit 3 and Unit 11
Computing similarity between Unit 4 and Unit 0
Computing similarity between Unit 4 and Unit 1
Computing similarity between Unit 4 and Unit 2
Computing similarity between Unit 4 and Unit 3
Computing similarity between Unit 4 and Unit 4
Computing similarity between Unit 4 and Unit 5
Computing similarity between Unit 4 and Unit 6
Computing similarity between Unit 4 and Unit 7
Computing similarity between Unit 4 and Unit 8
Computing similarity between Unit 4 and Unit 9
Computing similarity between Unit 4 and Unit 10
Computing similarity between Unit 4 and Unit 11
Computing similarity between Unit 5 and Unit 0
Computing similarity between Unit 5 and Unit 1
Computing similarity between Unit 5 and Unit 2
Computing similarity between Unit 5 and Unit 3
Computing similarity between Unit 5 and Unit 4
Computing similarity between Unit 5 and Unit 5
Computing similarity between Unit 5 and Unit 6
Computing similarity between Unit 5 and Unit 7
Computing similarity between Unit 5 and Unit 8
Computing similarity between Unit 5 and Unit 9
Computing similarity between Unit 5 and Unit 10
Computing similarity between Unit 5 and Unit 11
Computing similarity between Unit 6 and Unit 0
Computing similarity between Unit 6 and Unit 1
Computing similarity between Unit 6 and Unit 2
Computing similarity between Unit 6 and Unit 3
Computing similarity between Unit 6 and Unit 4
Computing similarity between Unit 6 and Unit 5
Computing similarity between Unit 6 and Unit 6
Computing similarity between Unit 6 and Unit 7
Computing similarity between Unit 6 and Unit 8
Computing similarity between Unit 6 and Unit 9
Computing similarity between Unit 6 and Unit 10
Computing similarity between Unit 6 and Unit 11
Computing similarity between Unit 7 and Unit 0
Computing similarity between Unit 7 and Unit 1
Computing similarity between Unit 7 and Unit 2
Computing similarity between Unit 7 and Unit 3
Computing similarity between Unit 7 and Unit 4
Computing similarity between Unit 7 and Unit 5
Computing similarity between Unit 7 and Unit 6
Computing similarity between Unit 7 and Unit 7
Computing similarity between Unit 7 and Unit 8
Computing similarity between Unit 7 and Unit 9
Computing similarity between Unit 7 and Unit 10
Computing similarity between Unit 7 and Unit 11
Computing similarity between Unit 8 and Unit 0
Computing similarity between Unit 8 and Unit 1
Computing similarity between Unit 8 and Unit 2
Computing similarity between Unit 8 and Unit 3
Computing similarity between Unit 8 and Unit 4
Computing similarity between Unit 8 and Unit 5
Computing similarity between Unit 8 and Unit 6
Computing similarity between Unit 8 and Unit 7
Computing similarity between Unit 8 and Unit 8
Computing similarity between Unit 8 and Unit 9
Computing similarity between Unit 8 and Unit 10
Computing similarity between Unit 8 and Unit 11
Computing similarity between Unit 9 and Unit 0
Computing similarity between Unit 9 and Unit 1
Computing similarity between Unit 9 and Unit 2
Computing similarity between Unit 9 and Unit 3
Computing similarity between Unit 9 and Unit 4
Computing similarity between Unit 9 and Unit 5
Computing similarity between Unit 9 and Unit 6
Computing similarity between Unit 9 and Unit 7
Computing similarity between Unit 9 and Unit 8
Computing similarity between Unit 9 and Unit 9
Computing similarity between Unit 9 and Unit 10
Computing similarity between Unit 9 and Unit 11
Computing similarity between Unit 10 and Unit 0
Computing similarity between Unit 10 and Unit 1
Computing similarity between Unit 10 and Unit 2
Computing similarity between Unit 10 and Unit 3
Computing similarity between Unit 10 and Unit 4
Computing similarity between Unit 10 and Unit 5
Computing similarity between Unit 10 and Unit 6
Computing similarity between Unit 10 and Unit 7
Computing similarity between Unit 10 and Unit 8
Computing similarity between Unit 10 and Unit 9
Computing similarity between Unit 10 and Unit 10
Computing similarity between Unit 10 and Unit 11
Computing similarity between Unit 11 and Unit 0
Computing similarity between Unit 11 and Unit 1
Computing similarity between Unit 11 and Unit 2
Computing similarity between Unit 11 and Unit 3
Computing similarity between Unit 11 and Unit 4
Computing similarity between Unit 11 and Unit 5
Computing similarity between Unit 11 and Unit 6
Computing similarity between Unit 11 and Unit 7
Computing similarity between Unit 11 and Unit 8
Computing similarity between Unit 11 and Unit 9
Computing similarity between Unit 11 and Unit 10
Computing similarity between Unit 11 and Unit 11

Similarity calculation done!
4 units similarity violations found:
Unit_1    Unit_2    Similarity
   unit003   unit007   75.19440124416796
   unit004   unit006   91.87279151943463
   unit006   unit004   72.82913165266106
   unit007   unit003   88.87867647058823

Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p

Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Deleting unit 7 from dataset
----------

Renaming following units...
Renaming unit008 to unit007
Renaming unit009 to unit008
Renaming unit010 to unit009
Renaming unit011 to unit010
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Deleting unit 4 from dataset
----------

Renaming following units...
Renaming unit005 to unit004
Renaming unit006 to unit005
Renaming unit007 to unit006
Renaming unit008 to unit007
Renaming unit009 to unit008
Renaming unit010 to unit009
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


---------
Beginning unit similarity calculation
----------
Computing similarity between Unit 0 and Unit 0
Computing similarity between Unit 0 and Unit 1
Computing similarity between Unit 0 and Unit 2
Computing similarity between Unit 0 and Unit 3
Computing similarity between Unit 0 and Unit 4
Computing similarity between Unit 0 and Unit 5
Computing similarity between Unit 0 and Unit 6
Computing similarity between Unit 0 and Unit 7
Computing similarity between Unit 0 and Unit 8
Computing similarity between Unit 0 and Unit 9
Computing similarity between Unit 1 and Unit 0
Computing similarity between Unit 1 and Unit 1
Computing similarity between Unit 1 and Unit 2
Computing similarity between Unit 1 and Unit 3
Computing similarity between Unit 1 and Unit 4
Computing similarity between Unit 1 and Unit 5
Computing similarity between Unit 1 and Unit 6
Computing similarity between Unit 1 and Unit 7
Computing similarity between Unit 1 and Unit 8
Computing similarity between Unit 1 and Unit 9
Computing similarity between Unit 2 and Unit 0
Computing similarity between Unit 2 and Unit 1
Computing similarity between Unit 2 and Unit 2
Computing similarity between Unit 2 and Unit 3
Computing similarity between Unit 2 and Unit 4
Computing similarity between Unit 2 and Unit 5
Computing similarity between Unit 2 and Unit 6
Computing similarity between Unit 2 and Unit 7
Computing similarity between Unit 2 and Unit 8
Computing similarity between Unit 2 and Unit 9
Computing similarity between Unit 3 and Unit 0
Computing similarity between Unit 3 and Unit 1
Computing similarity between Unit 3 and Unit 2
Computing similarity between Unit 3 and Unit 3
Computing similarity between Unit 3 and Unit 4
Computing similarity between Unit 3 and Unit 5
Computing similarity between Unit 3 and Unit 6
Computing similarity between Unit 3 and Unit 7
Computing similarity between Unit 3 and Unit 8
Computing similarity between Unit 3 and Unit 9
Computing similarity between Unit 4 and Unit 0
Computing similarity between Unit 4 and Unit 1
Computing similarity between Unit 4 and Unit 2
Computing similarity between Unit 4 and Unit 3
Computing similarity between Unit 4 and Unit 4
Computing similarity between Unit 4 and Unit 5
Computing similarity between Unit 4 and Unit 6
Computing similarity between Unit 4 and Unit 7
Computing similarity between Unit 4 and Unit 8
Computing similarity between Unit 4 and Unit 9
Computing similarity between Unit 5 and Unit 0
Computing similarity between Unit 5 and Unit 1
Computing similarity between Unit 5 and Unit 2
Computing similarity between Unit 5 and Unit 3
Computing similarity between Unit 5 and Unit 4
Computing similarity between Unit 5 and Unit 5
Computing similarity between Unit 5 and Unit 6
Computing similarity between Unit 5 and Unit 7
Computing similarity between Unit 5 and Unit 8
Computing similarity between Unit 5 and Unit 9
Computing similarity between Unit 6 and Unit 0
Computing similarity between Unit 6 and Unit 1
Computing similarity between Unit 6 and Unit 2
Computing similarity between Unit 6 and Unit 3
Computing similarity between Unit 6 and Unit 4
Computing similarity between Unit 6 and Unit 5
Computing similarity between Unit 6 and Unit 6
Computing similarity between Unit 6 and Unit 7
Computing similarity between Unit 6 and Unit 8
Computing similarity between Unit 6 and Unit 9
Computing similarity between Unit 7 and Unit 0
Computing similarity between Unit 7 and Unit 1
Computing similarity between Unit 7 and Unit 2
Computing similarity between Unit 7 and Unit 3
Computing similarity between Unit 7 and Unit 4
Computing similarity between Unit 7 and Unit 5
Computing similarity between Unit 7 and Unit 6
Computing similarity between Unit 7 and Unit 7
Computing similarity between Unit 7 and Unit 8
Computing similarity between Unit 7 and Unit 9
Computing similarity between Unit 8 and Unit 0
Computing similarity between Unit 8 and Unit 1
Computing similarity between Unit 8 and Unit 2
Computing similarity between Unit 8 and Unit 3
Computing similarity between Unit 8 and Unit 4
Computing similarity between Unit 8 and Unit 5
Computing similarity between Unit 8 and Unit 6
Computing similarity between Unit 8 and Unit 7
Computing similarity between Unit 8 and Unit 8
Computing similarity between Unit 8 and Unit 9
Computing similarity between Unit 9 and Unit 0
Computing similarity between Unit 9 and Unit 1
Computing similarity between Unit 9 and Unit 2
Computing similarity between Unit 9 and Unit 3
Computing similarity between Unit 9 and Unit 4
Computing similarity between Unit 9 and Unit 5
Computing similarity between Unit 9 and Unit 6
Computing similarity between Unit 9 and Unit 7
Computing similarity between Unit 9 and Unit 8
Computing similarity between Unit 9 and Unit 9

Similarity calculation done!
No unit similarity violations found!

Running Blech Clust
-------------------
Parameters
file_dir             /data/Katz_Data/Stk11_Project/RN24/RN24_4taste_preCTA_191128_130858
data_quality         clean
sampling_rate        30000.0
clustering_params    
    Max Number of Clusters      11
    Max Number of Iterations    1000
    Convergence Criterion       0.001
    GMM random restarts         10
    
data_params          
    V_cutoff for disconnected headstage     1500
    Max rate of cutoff breach per second    0.2
    Max allowed seconds with a breach       10
    Max allowed breaches per second         20
    Intra-cluster waveform amp SD cutoff    3
    
bandpass_params      
    Lower freq cutoff    300
    Upper freq cutoff    3000
    
spike_snapshot       
    Time before spike (ms)    0.5
    Time after spike (ms)     1
    

Writing electrode_map to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest.h5...
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p

Clustering Complete
------------------

----------
Deleting unit 9 from dataset
----------

Renaming following units...
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Deleting unit 8 from dataset
----------

Renaming following units...
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Deleting unit 7 from dataset
----------

Renaming following units...
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Deleting unit 6 from dataset
----------

Renaming following units...
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Deleting unit 5 from dataset
----------

Renaming following units...
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Deleting unit 4 from dataset
----------

Renaming following units...
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Deleting unit 3 from dataset
----------

Renaming following units...
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Deleting unit 2 from dataset
----------

Renaming following units...
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Deleting unit 1 from dataset
----------

Renaming following units...
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Deleting unit 0 from dataset
----------

Renaming following units...
Correcting names of plots and metrics...
Finished deleting unit
----------
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


----------
Clustering Cleanup
----------
Done! Elapsed Time: 0.01

Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p


---------
Beginning unit similarity calculation
----------
Computing similarity between Unit 0 and Unit 0
Computing similarity between Unit 0 and Unit 1
Computing similarity between Unit 0 and Unit 2
Computing similarity between Unit 0 and Unit 3
Computing similarity between Unit 0 and Unit 4
Computing similarity between Unit 0 and Unit 5
Computing similarity between Unit 0 and Unit 6
Computing similarity between Unit 0 and Unit 7
Computing similarity between Unit 0 and Unit 8
Computing similarity between Unit 0 and Unit 9
Computing similarity between Unit 1 and Unit 0
Computing similarity between Unit 1 and Unit 1
Computing similarity between Unit 1 and Unit 2
Computing similarity between Unit 1 and Unit 3
Computing similarity between Unit 1 and Unit 4
Computing similarity between Unit 1 and Unit 5
Computing similarity between Unit 1 and Unit 6
Computing similarity between Unit 1 and Unit 7
Computing similarity between Unit 1 and Unit 8
Computing similarity between Unit 1 and Unit 9
Computing similarity between Unit 2 and Unit 0
Computing similarity between Unit 2 and Unit 1
Computing similarity between Unit 2 and Unit 2
Computing similarity between Unit 2 and Unit 3
Computing similarity between Unit 2 and Unit 4
Computing similarity between Unit 2 and Unit 5
Computing similarity between Unit 2 and Unit 6
Computing similarity between Unit 2 and Unit 7
Computing similarity between Unit 2 and Unit 8
Computing similarity between Unit 2 and Unit 9
Computing similarity between Unit 3 and Unit 0
Computing similarity between Unit 3 and Unit 1
Computing similarity between Unit 3 and Unit 2
Computing similarity between Unit 3 and Unit 3
Computing similarity between Unit 3 and Unit 4
Computing similarity between Unit 3 and Unit 5
Computing similarity between Unit 3 and Unit 6
Computing similarity between Unit 3 and Unit 7
Computing similarity between Unit 3 and Unit 8
Computing similarity between Unit 3 and Unit 9
Computing similarity between Unit 4 and Unit 0
Computing similarity between Unit 4 and Unit 1
Computing similarity between Unit 4 and Unit 2
Computing similarity between Unit 4 and Unit 3
Computing similarity between Unit 4 and Unit 4
Computing similarity between Unit 4 and Unit 5
Computing similarity between Unit 4 and Unit 6
Computing similarity between Unit 4 and Unit 7
Computing similarity between Unit 4 and Unit 8
Computing similarity between Unit 4 and Unit 9
Computing similarity between Unit 5 and Unit 0
Computing similarity between Unit 5 and Unit 1
Computing similarity between Unit 5 and Unit 2
Computing similarity between Unit 5 and Unit 3
Computing similarity between Unit 5 and Unit 4
Computing similarity between Unit 5 and Unit 5
Computing similarity between Unit 5 and Unit 6
Computing similarity between Unit 5 and Unit 7
Computing similarity between Unit 5 and Unit 8
Computing similarity between Unit 5 and Unit 9
Computing similarity between Unit 6 and Unit 0
Computing similarity between Unit 6 and Unit 1
Computing similarity between Unit 6 and Unit 2
Computing similarity between Unit 6 and Unit 3
Computing similarity between Unit 6 and Unit 4
Computing similarity between Unit 6 and Unit 5
Computing similarity between Unit 6 and Unit 6
Computing similarity between Unit 6 and Unit 7
Computing similarity between Unit 6 and Unit 8
Computing similarity between Unit 6 and Unit 9
Computing similarity between Unit 7 and Unit 0
Computing similarity between Unit 7 and Unit 1
Computing similarity between Unit 7 and Unit 2
Computing similarity between Unit 7 and Unit 3
Computing similarity between Unit 7 and Unit 4
Computing similarity between Unit 7 and Unit 5
Computing similarity between Unit 7 and Unit 6
Computing similarity between Unit 7 and Unit 7
Computing similarity between Unit 7 and Unit 8
Computing similarity between Unit 7 and Unit 9
Computing similarity between Unit 8 and Unit 0
Computing similarity between Unit 8 and Unit 1
Computing similarity between Unit 8 and Unit 2
Computing similarity between Unit 8 and Unit 3
Computing similarity between Unit 8 and Unit 4
Computing similarity between Unit 8 and Unit 5
Computing similarity between Unit 8 and Unit 6
Computing similarity between Unit 8 and Unit 7
Computing similarity between Unit 8 and Unit 8
Computing similarity between Unit 8 and Unit 9
Computing similarity between Unit 9 and Unit 0
Computing similarity between Unit 9 and Unit 1
Computing similarity between Unit 9 and Unit 2
Computing similarity between Unit 9 and Unit 3
Computing similarity between Unit 9 and Unit 4
Computing similarity between Unit 9 and Unit 5
Computing similarity between Unit 9 and Unit 6
Computing similarity between Unit 9 and Unit 7
Computing similarity between Unit 9 and Unit 8
Computing similarity between Unit 9 and Unit 9

Similarity calculation done!
No unit similarity violations found!
Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p

Generating unit arrays with parameters:
----------
    dig_ins_to_use    
            0
    laser_channels    
        
    sampling_rate     30000.0
    pre_stimulus      2000
    post_stimulus     5000
    

----------
Making Unit Spike Arrays
----------


----------
Reading Trial Data Table From Store
----------
Done! Elapsed Time: 0.05


----------
Reading Trial Data Table From Store
----------
Done! Elapsed Time: 0.01

Creating spike arrays for dig_in_0...
Done with spike array creation!
----------

Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p

Saved RN24_ctaTest to /data/Katz_Data/Stk11_Project/RN24/RN24_ctaTest_191130_122956/RN24_ctaTest_dataset.p

